Few compilation issues faced:

After configuration of include and lib folders for IPv6Kit and zlib following
error are faced:

Error: 

1. htsback.obj : error LNK2019: unresolved external symbol _launch_mms
referenced in function _back_add

So I have changed defination of HTS_USEMMS to zero in File:  htsglobal.h. May
be not need MMS for my purpose.

// utiliser <mms://?#ifndef> HTS_USEMMS
// Commented by Rajesh Nikam
//#define HTS_USEMMS 1 
#define HTS_USEMMS 0
#endif


2. After doing above change, compilation started giving following error:

error C2065: 'false' : undeclared identifier at various places.

Solution:

File: htslib.h

#if HTS_USEMMS
#define OPT_MMS(a) (strfield2((a), "video/x-ms-asf") != 0)
#else
// Commnented by Rajesh Nikam
//#define OPT_MMS(a) (false)
#define OPT_MMS(a) (0)
#endif