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Subject: make[2]: *** [libhtsjava.la] Error 1
Author: Lee
Date: 11/04/2008 08:27
 
Not sure what the problem is here. I´m a bit of a newbie, but any help would
be appreciated.

[root@localhost httrack-3.43.1]# ./configure && make && make install
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
/bin/sh: /home/lee/install/httrack: No such file or directory
configure: WARNING: `missing' script is too old or missing
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... g++ -E
checking for g77... g77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g77 accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC
checking if gcc PIC flag -fPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries...
yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries...
yes
checking for g++ option to produce PIC... -fPIC
checking if g++ PIC flag -fPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries...
yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g77 option to produce PIC... -fPIC
checking if g77 PIC flag -fPIC works... yes
checking if g77 static flag -static works... yes
checking if g77 supports -c -o file.o... yes
checking whether the g77 linker (/usr/bin/ld) supports shared libraries...
yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether ln -s works... yes
checking for long... yes
checking size of long... 4
checking for long long... yes
checking size of long long... 8
checking long long printf format... found
checking for in_addr_t... yes
checking if zlib is wanted... yes
checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... (cached) yes
checking zlib in /usr... ok
checking for getaddrinfo in -lc... yes
checking for fopen64 in -lc... yes
checking for pthread_create in -lpthread... yes
checking for socket in -lsocket... no
not necessary
checking for dlopen in -ldl... yes
checking for ftime in -lc... yes
checking for setuid in -lc... yes
checking for snprintf... yes
checking for vsnprintf... yes
checking for working snprintf... yes
checking for working vsnprintf... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating man/Makefile
config.status: creating m4/Makefile
config.status: creating templates/Makefile
config.status: creating lang/Makefile
config.status: creating html/Makefile
config.status: creating libtest/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
make  all-recursive
make[1]: Entering directory `/home/lee/install/httrack 3.43/httrack-3.43.1'
Making all in src
make[2]: Entering directory `/home/lee/install/httrack
3.43/httrack-3.43.1/src'
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htscore.lo -MD -MP -MF ".deps/htscore.Tpo" \
          -c -o htscore.lo `test -f 'htscore.c' || echo './'`htscore.c; \
        then mv -f ".deps/htscore.Tpo" ".deps/htscore.Plo"; \
        else rm -f ".deps/htscore.Tpo"; exit 1; \
        fi
mkdir .libs
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htscore.lo -MD -MP -MF
.deps/htscore.Tpo -c htscore.c  -fPIC -DPIC -o .libs/htscore.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htscore.lo -MD -MP -MF
.deps/htscore.Tpo -c htscore.c -o htscore.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsparse.lo -MD -MP -MF ".deps/htsparse.Tpo" \
          -c -o htsparse.lo `test -f 'htsparse.c' || echo './'`htsparse.c; \
        then mv -f ".deps/htsparse.Tpo" ".deps/htsparse.Plo"; \
        else rm -f ".deps/htsparse.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsparse.lo -MD -MP -MF
.deps/htsparse.Tpo -c htsparse.c  -fPIC -DPIC -o .libs/htsparse.o
htsparse.c: In function 'htsparse':
htsparse.c:3195: warning: pointer targets in passing argument 1 of 'domd5mem'
differ in signedness
htsparse.c:3195: warning: pointer targets in passing argument 3 of 'domd5mem'
differ in signedness
htsparse.c: In function 'hts_mirror_check_moved':
htsparse.c:3224: warning: unused variable 'makestat_fp'
htsparse.c:3224: warning: unused variable 'makestat_time'
htsparse.c:3224: warning: unused variable 'makeindex_firstlink'
htsparse.c: In function 'hts_mirror_process_user_interaction':
htsparse.c:3642: warning: unused variable 'makestat_fp'
htsparse.c:3642: warning: unused variable 'makestat_time'
htsparse.c:3642: warning: unused variable 'makeindex_firstlink'
htsparse.c: In function 'hts_mirror_wait_for_next_file':
htsparse.c:3832: warning: unused variable 'makeindex_firstlink'
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsparse.lo -MD -MP -MF
.deps/htsparse.Tpo -c htsparse.c -o htsparse.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsback.lo -MD -MP -MF ".deps/htsback.Tpo" \
          -c -o htsback.lo `test -f 'htsback.c' || echo './'`htsback.c; \
        then mv -f ".deps/htsback.Tpo" ".deps/htsback.Plo"; \
        else rm -f ".deps/htsback.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsback.lo -MD -MP -MF
.deps/htsback.Tpo -c htsback.c  -fPIC -DPIC -o .libs/htsback.o
htsback.c: In function 'back_unserialize':
htsback.c:874: warning: dereferencing type-punned pointer will break
strict-aliasing rules
htsback.c: In function 'back_add':
htsback.c:1442: warning: unused variable 'pos'
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsback.lo -MD -MP -MF
.deps/htsback.Tpo -c htsback.c -o htsback.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htscache.lo -MD -MP -MF ".deps/htscache.Tpo" \
          -c -o htscache.lo `test -f 'htscache.c' || echo './'`htscache.c; \
        then mv -f ".deps/htscache.Tpo" ".deps/htscache.Plo"; \
        else rm -f ".deps/htscache.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htscache.lo -MD -MP -MF
.deps/htscache.Tpo -c htscache.c  -fPIC -DPIC -o .libs/htscache.o
htscache.c: In function 'cache_read_including_broken':
htscache.c:546: warning: suggest parentheses around assignment used as truth
value
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htscache.lo -MD -MP -MF
.deps/htscache.Tpo -c htscache.c -o htscache.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htscatchurl.lo -MD -MP -MF ".deps/htscatchurl.Tpo" \
          -c -o htscatchurl.lo `test -f 'htscatchurl.c' || echo
'./'`htscatchurl.c; \
        then mv -f ".deps/htscatchurl.Tpo" ".deps/htscatchurl.Plo"; \
        else rm -f ".deps/htscatchurl.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htscatchurl.lo -MD -MP
-MF .deps/htscatchurl.Tpo -c htscatchurl.c  -fPIC -DPIC -o
.libs/htscatchurl.o
htscatchurl.c: In function 'catch_url_init':
htscatchurl.c:113: warning: pointer targets in passing argument 3 of
'getsockname' differ in signedness
htscatchurl.c: In function 'catch_url':
htscatchurl.c:165: warning: pointer targets in passing argument 3 of 'accept'
differ in signedness
htscatchurl.c:181: warning: pointer targets in passing argument 3 of
'getpeername' differ in signedness
htscatchurl.c: At top level:
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htscatchurl.lo -MD -MP
-MF .deps/htscatchurl.Tpo -c htscatchurl.c -o htscatchurl.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsfilters.lo -MD -MP -MF ".deps/htsfilters.Tpo" \
          -c -o htsfilters.lo `test -f 'htsfilters.c' || echo
'./'`htsfilters.c; \
        then mv -f ".deps/htsfilters.Tpo" ".deps/htsfilters.Plo"; \
        else rm -f ".deps/htsfilters.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsfilters.lo -MD -MP
-MF .deps/htsfilters.Tpo -c htsfilters.c  -fPIC -DPIC -o .libs/htsfilters.o
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsfilters.lo -MD -MP
-MF .deps/htsfilters.Tpo -c htsfilters.c -o htsfilters.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsftp.lo -MD -MP -MF ".deps/htsftp.Tpo" \
          -c -o htsftp.lo `test -f 'htsftp.c' || echo './'`htsftp.c; \
        then mv -f ".deps/htsftp.Tpo" ".deps/htsftp.Plo"; \
        else rm -f ".deps/htsftp.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsftp.lo -MD -MP -MF
.deps/htsftp.Tpo -c htsftp.c  -fPIC -DPIC -o .libs/htsftp.o
htsftp.c: In function 'get_datasocket':
htsftp.c:851: warning: pointer targets in passing argument 3 of 'getsockname'
differ in signedness
htsftp.c: At top level:
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsftp.lo -MD -MP -MF
.deps/htsftp.Tpo -c htsftp.c -o htsftp.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htshash.lo -MD -MP -MF ".deps/htshash.Tpo" \
          -c -o htshash.lo `test -f 'htshash.c' || echo './'`htshash.c; \
        then mv -f ".deps/htshash.Tpo" ".deps/htshash.Plo"; \
        else rm -f ".deps/htshash.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htshash.lo -MD -MP -MF
.deps/htshash.Tpo -c htshash.c  -fPIC -DPIC -o .libs/htshash.o
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htshash.lo -MD -MP -MF
.deps/htshash.Tpo -c htshash.c -o htshash.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsinthash.lo -MD -MP -MF ".deps/htsinthash.Tpo" \
          -c -o htsinthash.lo `test -f 'htsinthash.c' || echo
'./'`htsinthash.c; \
        then mv -f ".deps/htsinthash.Tpo" ".deps/htsinthash.Plo"; \
        else rm -f ".deps/htsinthash.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsinthash.lo -MD -MP
-MF .deps/htsinthash.Tpo -c htsinthash.c  -fPIC -DPIC -o .libs/htsinthash.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsinthash.lo -MD -MP
-MF .deps/htsinthash.Tpo -c htsinthash.c -o htsinthash.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htshelp.lo -MD -MP -MF ".deps/htshelp.Tpo" \
          -c -o htshelp.lo `test -f 'htshelp.c' || echo './'`htshelp.c; \
        then mv -f ".deps/htshelp.Tpo" ".deps/htshelp.Plo"; \
        else rm -f ".deps/htshelp.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htshelp.lo -MD -MP -MF
.deps/htshelp.Tpo -c htshelp.c  -fPIC -DPIC -o .libs/htshelp.o
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htshelp.lo -MD -MP -MF
.deps/htshelp.Tpo -c htshelp.c -o htshelp.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htslib.lo -MD -MP -MF ".deps/htslib.Tpo" \
          -c -o htslib.lo `test -f 'htslib.c' || echo './'`htslib.c; \
        then mv -f ".deps/htslib.Tpo" ".deps/htslib.Plo"; \
        else rm -f ".deps/htslib.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htslib.lo -MD -MP -MF
.deps/htslib.Tpo -c htslib.c  -fPIC -DPIC -o .libs/htslib.o
htslib.c: In function 'is_unicode_utf8':
htslib.c:3044: warning: comparison is always true due to limited range of data
type
htslib.c: In function 'escape_remove_control':
htslib.c:3774: warning: pointer targets in passing argument 2 of 'strcpy'
differ in signedness
htslib.c:3774: warning: pointer targets in passing argument 1 of 'strlen'
differ in signedness
htslib.c:3775: warning: pointer targets in passing argument 1 of 'strcpy'
differ in signedness
htslib.c: In function 'hts_init':
htslib.c:5073: warning: pointer targets in passing argument 1 of 'strlen'
differ in signedness
htslib.c:5073: warning: pointer targets in passing argument 3 of 'domd5mem'
differ in signedness
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htslib.lo -MD -MP -MF
.deps/htslib.Tpo -c htslib.c -o htslib.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htscoremain.lo -MD -MP -MF ".deps/htscoremain.Tpo" \
          -c -o htscoremain.lo `test -f 'htscoremain.c' || echo
'./'`htscoremain.c; \
        then mv -f ".deps/htscoremain.Tpo" ".deps/htscoremain.Plo"; \
        else rm -f ".deps/htscoremain.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htscoremain.lo -MD -MP
-MF .deps/htscoremain.Tpo -c htscoremain.c  -fPIC -DPIC -o
.libs/htscoremain.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htscoremain.lo -MD -MP
-MF .deps/htscoremain.Tpo -c htscoremain.c -o htscoremain.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsname.lo -MD -MP -MF ".deps/htsname.Tpo" \
          -c -o htsname.lo `test -f 'htsname.c' || echo './'`htsname.c; \
        then mv -f ".deps/htsname.Tpo" ".deps/htsname.Plo"; \
        else rm -f ".deps/htsname.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsname.lo -MD -MP -MF
.deps/htsname.Tpo -c htsname.c  -fPIC -DPIC -o .libs/htsname.o
htsname.c: In function 'url_savename':
htsname.c:916: warning: pointer targets in passing argument 1 of 'domd5mem'
differ in signedness
htsname.c:916: warning: pointer targets in passing argument 3 of 'domd5mem'
differ in signedness
htsname.c: In function 'url_md5':
htsname.c:1469: warning: pointer targets in passing argument 1 of 'domd5mem'
differ in signedness
htsname.c:1469: warning: pointer targets in passing argument 3 of 'domd5mem'
differ in signedness
htsname.c: In function 'url_savename_refname':
htsname.c:1493: warning: pointer targets in passing argument 2 of 'MD5Update'
differ in signedness
htsname.c:1494: warning: pointer targets in passing argument 2 of 'MD5Update'
differ in signedness
htsname.c:1495: warning: pointer targets in passing argument 2 of 'MD5Update'
differ in signedness
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsname.lo -MD -MP -MF
.deps/htsname.Tpo -c htsname.c -o htsname.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsrobots.lo -MD -MP -MF ".deps/htsrobots.Tpo" \
          -c -o htsrobots.lo `test -f 'htsrobots.c' || echo './'`htsrobots.c;
\
        then mv -f ".deps/htsrobots.Tpo" ".deps/htsrobots.Plo"; \
        else rm -f ".deps/htsrobots.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsrobots.lo -MD -MP -MF
.deps/htsrobots.Tpo -c htsrobots.c  -fPIC -DPIC -o .libs/htsrobots.o
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsrobots.lo -MD -MP -MF
.deps/htsrobots.Tpo -c htsrobots.c -o htsrobots.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htstools.lo -MD -MP -MF ".deps/htstools.Tpo" \
          -c -o htstools.lo `test -f 'htstools.c' || echo './'`htstools.c; \
        then mv -f ".deps/htstools.Tpo" ".deps/htstools.Plo"; \
        else rm -f ".deps/htstools.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htstools.lo -MD -MP -MF
.deps/htstools.Tpo -c htstools.c  -fPIC -DPIC -o .libs/htstools.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htstools.lo -MD -MP -MF
.deps/htstools.Tpo -c htstools.c -o htstools.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htswizard.lo -MD -MP -MF ".deps/htswizard.Tpo" \
          -c -o htswizard.lo `test -f 'htswizard.c' || echo './'`htswizard.c;
\
        then mv -f ".deps/htswizard.Tpo" ".deps/htswizard.Plo"; \
        else rm -f ".deps/htswizard.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htswizard.lo -MD -MP -MF
.deps/htswizard.Tpo -c htswizard.c  -fPIC -DPIC -o .libs/htswizard.o
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htswizard.lo -MD -MP -MF
.deps/htswizard.Tpo -c htswizard.c -o htswizard.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsalias.lo -MD -MP -MF ".deps/htsalias.Tpo" \
          -c -o htsalias.lo `test -f 'htsalias.c' || echo './'`htsalias.c; \
        then mv -f ".deps/htsalias.Tpo" ".deps/htsalias.Plo"; \
        else rm -f ".deps/htsalias.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsalias.lo -MD -MP -MF
.deps/htsalias.Tpo -c htsalias.c  -fPIC -DPIC -o .libs/htsalias.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsalias.lo -MD -MP -MF
.deps/htsalias.Tpo -c htsalias.c -o htsalias.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsthread.lo -MD -MP -MF ".deps/htsthread.Tpo" \
          -c -o htsthread.lo `test -f 'htsthread.c' || echo './'`htsthread.c;
\
        then mv -f ".deps/htsthread.Tpo" ".deps/htsthread.Plo"; \
        else rm -f ".deps/htsthread.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsthread.lo -MD -MP -MF
.deps/htsthread.Tpo -c htsthread.c  -fPIC -DPIC -o .libs/htsthread.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsthread.lo -MD -MP -MF
.deps/htsthread.Tpo -c htsthread.c -o htsthread.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsindex.lo -MD -MP -MF ".deps/htsindex.Tpo" \
          -c -o htsindex.lo `test -f 'htsindex.c' || echo './'`htsindex.c; \
        then mv -f ".deps/htsindex.Tpo" ".deps/htsindex.Plo"; \
        else rm -f ".deps/htsindex.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsindex.lo -MD -MP -MF
.deps/htsindex.Tpo -c htsindex.c  -fPIC -DPIC -o .libs/htsindex.o
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsindex.lo -MD -MP -MF
.deps/htsindex.Tpo -c htsindex.c -o htsindex.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsbauth.lo -MD -MP -MF ".deps/htsbauth.Tpo" \
          -c -o htsbauth.lo `test -f 'htsbauth.c' || echo './'`htsbauth.c; \
        then mv -f ".deps/htsbauth.Tpo" ".deps/htsbauth.Plo"; \
        else rm -f ".deps/htsbauth.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsbauth.lo -MD -MP -MF
.deps/htsbauth.Tpo -c htsbauth.c  -fPIC -DPIC -o .libs/htsbauth.o
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsbauth.lo -MD -MP -MF
.deps/htsbauth.Tpo -c htsbauth.c -o htsbauth.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsmd5.lo -MD -MP -MF ".deps/htsmd5.Tpo" \
          -c -o htsmd5.lo `test -f 'htsmd5.c' || echo './'`htsmd5.c; \
        then mv -f ".deps/htsmd5.Tpo" ".deps/htsmd5.Plo"; \
        else rm -f ".deps/htsmd5.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsmd5.lo -MD -MP -MF
.deps/htsmd5.Tpo -c htsmd5.c  -fPIC -DPIC -o .libs/htsmd5.o
htsmd5.c: In function 'domd5mem':
htsmd5.c:69: warning: pointer targets in passing argument 1 of 'sprintf'
differ in signedness
htsmd5.c: In function 'md5sum32':
htsmd5.c:77: warning: pointer targets in passing argument 1 of 'domd5mem'
differ in signedness
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsmd5.lo -MD -MP -MF
.deps/htsmd5.Tpo -c htsmd5.c -o htsmd5.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htszlib.lo -MD -MP -MF ".deps/htszlib.Tpo" \
          -c -o htszlib.lo `test -f 'htszlib.c' || echo './'`htszlib.c; \
        then mv -f ".deps/htszlib.Tpo" ".deps/htszlib.Plo"; \
        else rm -f ".deps/htszlib.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htszlib.lo -MD -MP -MF
.deps/htszlib.Tpo -c htszlib.c  -fPIC -DPIC -o .libs/htszlib.o
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htszlib.lo -MD -MP -MF
.deps/htszlib.Tpo -c htszlib.c -o htszlib.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htswrap.lo -MD -MP -MF ".deps/htswrap.Tpo" \
          -c -o htswrap.lo `test -f 'htswrap.c' || echo './'`htswrap.c; \
        then mv -f ".deps/htswrap.Tpo" ".deps/htswrap.Plo"; \
        else rm -f ".deps/htswrap.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htswrap.lo -MD -MP -MF
.deps/htswrap.Tpo -c htswrap.c  -fPIC -DPIC -o .libs/htswrap.o
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htswrap.lo -MD -MP -MF
.deps/htswrap.Tpo -c htswrap.c -o htswrap.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsmodules.lo -MD -MP -MF ".deps/htsmodules.Tpo" \
          -c -o htsmodules.lo `test -f 'htsmodules.c' || echo
'./'`htsmodules.c; \
        then mv -f ".deps/htsmodules.Tpo" ".deps/htsmodules.Plo"; \
        else rm -f ".deps/htsmodules.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsmodules.lo -MD -MP
-MF .deps/htsmodules.Tpo -c htsmodules.c  -fPIC -DPIC -o .libs/htsmodules.o
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsmodules.lo -MD -MP
-MF .deps/htsmodules.Tpo -c htsmodules.c -o htsmodules.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT md5.lo -MD -MP -MF ".deps/md5.Tpo" \
          -c -o md5.lo `test -f 'md5.c' || echo './'`md5.c; \
        then mv -f ".deps/md5.Tpo" ".deps/md5.Plo"; \
        else rm -f ".deps/md5.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT md5.lo -MD -MP -MF
.deps/md5.Tpo -c md5.c  -fPIC -DPIC -o .libs/md5.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT md5.lo -MD -MP -MF
.deps/md5.Tpo -c md5.c -o md5.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT htsmms.lo -MD -MP -MF ".deps/htsmms.Tpo" \
          -c -o htsmms.lo `test -f 'htsmms.c' || echo './'`htsmms.c; \
        then mv -f ".deps/htsmms.Tpo" ".deps/htsmms.Plo"; \
        else rm -f ".deps/htsmms.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsmms.lo -MD -MP -MF
.deps/htsmms.Tpo -c htsmms.c  -fPIC -DPIC -o .libs/htsmms.o
htslib.h:93: warning: 'getHtsOptBuff_' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT htsmms.lo -MD -MP -MF
.deps/htsmms.Tpo -c htsmms.c -o htsmms.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT ioapi.lo -MD -MP -MF ".deps/ioapi.Tpo" \
          -c -o ioapi.lo `test -f 'minizip/ioapi.c' || echo
'./'`minizip/ioapi.c; \
        then mv -f ".deps/ioapi.Tpo" ".deps/ioapi.Plo"; \
        else rm -f ".deps/ioapi.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT ioapi.lo -MD -MP -MF
.deps/ioapi.Tpo -c minizip/ioapi.c  -fPIC -DPIC -o .libs/ioapi.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT ioapi.lo -MD -MP -MF
.deps/ioapi.Tpo -c minizip/ioapi.c -o ioapi.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT mztools.lo -MD -MP -MF ".deps/mztools.Tpo" \
          -c -o mztools.lo `test -f 'minizip/mztools.c' || echo
'./'`minizip/mztools.c; \
        then mv -f ".deps/mztools.Tpo" ".deps/mztools.Plo"; \
        else rm -f ".deps/mztools.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT mztools.lo -MD -MP -MF
.deps/mztools.Tpo -c minizip/mztools.c  -fPIC -DPIC -o .libs/mztools.o
minizip/mztools.c:37: warning: function declaration isn't a prototype
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT mztools.lo -MD -MP -MF
.deps/mztools.Tpo -c minizip/mztools.c -o mztools.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT unzip.lo -MD -MP -MF ".deps/unzip.Tpo" \
          -c -o unzip.lo `test -f 'minizip/unzip.c' || echo
'./'`minizip/unzip.c; \
        then mv -f ".deps/unzip.Tpo" ".deps/unzip.Plo"; \
        else rm -f ".deps/unzip.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT unzip.lo -MD -MP -MF
.deps/unzip.Tpo -c minizip/unzip.c  -fPIC -DPIC -o .libs/unzip.o
minizip/unzip.c:269: warning: function declaration isn't a prototype
minizip/unzip.c:555: warning: function declaration isn't a prototype
minizip/unzip.c: In function 'unzlocal_GetCurrentFileInfoInternal':
minizip/unzip.c:616: warning: suggest explicit braces to avoid ambiguous
'else'
minizip/unzip.c:696: warning: suggest explicit braces to avoid ambiguous
'else'
minizip/unzip.c:721: warning: suggest explicit braces to avoid ambiguous
'else'
minizip/unzip.c: At top level:
minizip/unzip.c:966: warning: function declaration isn't a prototype
minizip/unzip.c: In function 'unzlocal_CheckCurrentFileCoherencyHeader':
minizip/unzip.c:985: warning: suggest explicit braces to avoid ambiguous
'else'
minizip/unzip.c: In function 'unzGetGlobalComment':
minizip/unzip.c:1529: warning: unused variable 'err'
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT unzip.lo -MD -MP -MF
.deps/unzip.Tpo -c minizip/unzip.c -o unzip.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT zip.lo -MD -MP -MF ".deps/zip.Tpo" \
          -c -o zip.lo `test -f 'minizip/zip.c' || echo './'`minizip/zip.c; \
        then mv -f ".deps/zip.Tpo" ".deps/zip.Plo"; \
        else rm -f ".deps/zip.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT zip.lo -MD -MP -MF
.deps/zip.Tpo -c minizip/zip.c  -fPIC -DPIC -o .libs/zip.o
In file included from minizip/zip.c:157:
minizip/crypt.h:91: warning: function declaration isn't a prototype
minizip/zip.c:161: warning: function declaration isn't a prototype
minizip/zip.c:175: warning: function declaration isn't a prototype
minizip/zip.c:186: warning: function declaration isn't a prototype
minizip/zip.c:192: warning: function declaration isn't a prototype
minizip/zip.c:200: warning: function declaration isn't a prototype
minizip/zip.c:310: warning: function declaration isn't a prototype
minizip/zip.c:917: warning: function declaration isn't a prototype
minizip/zip.c:193: warning: 'free_linkedlist' defined but not used
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT zip.lo -MD -MP -MF
.deps/zip.Tpo -c minizip/zip.c -o zip.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT error.lo -MD -MP -MF ".deps/error.Tpo" \
          -c -o error.lo `test -f 'mmsrip/error.c' || echo
'./'`mmsrip/error.c; \
        then mv -f ".deps/error.Tpo" ".deps/error.Plo"; \
        else rm -f ".deps/error.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT error.lo -MD -MP -MF
.deps/error.Tpo -c mmsrip/error.c  -fPIC -DPIC -o .libs/error.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT error.lo -MD -MP -MF
.deps/error.Tpo -c mmsrip/error.c -o error.o >/dev/null 2>&1
if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3
-Wall -Wcast-align -Wstrict-prototypes -Wmissing-prototypes
-Wmissing-declarations -Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-DPREFIX=\""/usr/local"\" -DSYSCONFDIR=\""/usr/local/etc"\"
-DDATADIR=\""/usr/local/share"\" -DLIBDIR=\""/usr/local/lib"\"  -I/usr/include 
-g -O2 -MT mms.lo -MD -MP -MF ".deps/mms.Tpo" \
          -c -o mms.lo `test -f 'mmsrip/mms.c' || echo './'`mmsrip/mms.c; \
        then mv -f ".deps/mms.Tpo" ".deps/mms.Plo"; \
        else rm -f ".deps/mms.Tpo"; exit 1; \
        fi
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT mms.lo -MD -MP -MF
.deps/mms.Tpo -c mmsrip/mms.c  -fPIC -DPIC -o .libs/mms.o
 gcc -DHAVE_CONFIG_H -I. -I. -I.. -O -g3 -Wall -Wcast-align
-Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations
-Wpointer-arith -Wnested-externs -D_REENTRANT -DINET6 -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DPREFIX=\"/usr/local\"
-DSYSCONFDIR=\"/usr/local/etc\" -DDATADIR=\"/usr/local/share\"
-DLIBDIR=\"/usr/local/lib\" -I/usr/include -g -O2 -MT mms.lo -MD -MP -MF
.deps/mms.Tpo -c mmsrip/mms.c -o mms.o >/dev/null 2>&1
/bin/sh ../libtool --mode=link gcc  -g -O2  -L/usr/lib -o libhttrack.la -rpath
/usr/local/lib -version-info 2:43:0 htscore.lo htsparse.lo htsback.lo
htscache.lo htscatchurl.lo htsfilters.lo htsftp.lo htshash.lo htsinthash.lo
htshelp.lo htslib.lo htscoremain.lo htsname.lo htsrobots.lo htstools.lo
htswizard.lo htsalias.lo htsthread.lo htsindex.lo htsbauth.lo htsmd5.lo
htszlib.lo htswrap.lo htsmodules.lo md5.lo htsmms.lo ioapi.lo mztools.lo
unzip.lo zip.lo error.lo mms.lo -lpthread  -ldl  -lz 
gcc -shared  .libs/htscore.o .libs/htsparse.o .libs/htsback.o .libs/htscache.o
.libs/htscatchurl.o .libs/htsfilters.o .libs/htsftp.o .libs/htshash.o
.libs/htsinthash.o .libs/htshelp.o .libs/htslib.o .libs/htscoremain.o
.libs/htsname.o .libs/htsrobots.o .libs/htstools.o .libs/htswizard.o
.libs/htsalias.o .libs/htsthread.o .libs/htsindex.o .libs/htsbauth.o
.libs/htsmd5.o .libs/htszlib.o .libs/htswrap.o .libs/htsmodules.o .libs/md5.o
.libs/htsmms.o .libs/ioapi.o .libs/mztools.o .libs/unzip.o .libs/zip.o
.libs/error.o .libs/mms.o  -L/usr/lib -lpthread -ldl -lz  -Wl,-soname
-Wl,libhttrack.so.2 -o .libs/libhttrack.so.2.0.43
(cd .libs && rm -f libhttrack.so.2 && ln -s libhttrack.so.2.0.43
libhttrack.so.2)
(cd .libs && rm -f libhttrack.so && ln -s libhttrack.so.2.0.43 libhttrack.so)
ar cru .libs/libhttrack.a  htscore.o htsparse.o htsback.o htscache.o
htscatchurl.o htsfilters.o htsftp.o htshash.
 
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make[2]: *** [libhtsjava.la] Error 1

11/04/2008 08:27
Re: make[2]: *** [libhtsjava.la] Error 1

11/05/2008 08:45
Re: make[2]: *** [libhtsjava.la] Error 1

12/01/2008 08:30




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