I just upgraded to version 3 of this great product 
Winhttrack. On a particular website (the alpine 
archive), I has some problem receiving a few of the 
pages. i experimented with a lot of the parameters, 
but am not able to solve it. You can reproduce the 
error by using, as a start page:

<http://members.nbci.com/weisshorn/weissmies.htm>

(the complete site is at 
<http://members.nbci.com/_XMCM/alp_archive/index.htm>)

The debug log states:
13:23:19 Debug:  Record: 
members.nbci.com/weisshorn/weissmies.htm -&gt; C:/My Web 
Sites/weiss/members.nbci.com/weisshorn/weissmies.htm
13:23:19 Debug:  relative link at members.nbci.com 
build with C:/My Web 
Sites/weiss/members.nbci.com/weisshorn/weissmies.htm 
and primary.html: C:/My Web 
Sites/weiss/members.nbci.com/weisshorn/weissmies.htm
13:23:19 Debug:  OK, NOTE: 
members.nbci.com/weisshorn/weissmies.htm -&gt; C:/My Web 
Sites/weiss/members.nbci.com/weisshorn/weissmies.htm
13:23:19 Debug:  Wait get: 
members.nbci.com/weisshorn/weissmies.htm