> I am able to capture all my html pages and even pdf 
> and word documents stored in a lotus notes database 
on 
> a domino server that were linked to from the html, 
but 
> when links were just to a notes document (and had 
the 
> format <http://server/directory/database/notesname?>>; OpenDocument'), the
notes document that the link was 
> to was not copied across. Do I just need to change a 
> setting to get the notes document to be copied 
across 
> or is it not possible?
Try to use filters, such as:
+server/directory/database/notesname?OpenDocument*

If this does not work, check robots.txt 
authorizations, or javascript routines (many 
javascript routines are impossible to crawl, 
unfortunately)