> a website has a program i want how do i copy the
> program from the site? and allow it to work
> independently

I'm new here, and someone stop me if this is out of line, but it might be
better if you only make one new post of the same request.

As to your specific request, I don't understand exactly what you are trying to
accomplish.  Is this something that is even accessible on the client side, is
it legal, and have you read HTTrack's documentation?
<http://www.httrack.com/html/index.html>