> Also, if you want HTTrack to follow that URL but it is on 
a different site, you will need to add it to the filters.
> +www.url.com/*

Absolutely - I tried using the same code, and using 
+www.url.com/* in the scan rules section, it just works:

<script>
<!--
function djropy1()
{
djropys1 =
open("../../www.url.com/index.html",
"E1","toolbar=0,location=0,status=0,menubar=0,scrollbars=0,r
esizable=0,width=550,height=180,screenX=200,screenY=200");
djropys1.focus();
}
// -->
</script>