1) Always post the ACTUAL command line used (or log file line two) so we know
what the site is, what ALL your settings are, etc.
2) Always post the URLs you're not getting and from what URL it is
referenced.
3) Always post anything USEFUL from the log file.
4) If you want everything use the near flag (get non-html files related) not
filters.
5) I always run with A) No External Pages so I know where the mirror ends.
With B) browser ID=msie 6 pulldown as some sites don't like a HTT one. With C)
Attempt to detect all links (for JS/CSS.) With D) Timeout=60, retry=9 to avoid
temporary network interruptions from deleting files.

> <http://biomodel.uah.es/Jmol/plots/phase-diagrams/>
> but I can't dowload the applet (don't want the code
> but the applet itself to use offline)

A) Applet is likely stored off site or not down from your starting point
(default is down only.) Try #4
B) On less the applet is self contained, it will try to DL files from the
server. In the mirror, your machine is the server and those files won't exist.
HTT can only DL what URLs it sees, and it can't see inside binaries (SWF,
Java)

Most likely it can't be done.