> OP: Is there any way to make this program check if
> there are more directories in a series? 
Number sequences: How to mirror only files/URLs using a certain ID/number
range - <http://httrack.kauler.com/help/URL_number_sequences>

> WinHTTrack does not detect the links because to get
> to them you have to click on a java box so, in a
> way, the links are hidden.
FAQ: JavaScript partial support. Java, can't be modified.
links are hidden.