Thanks for the help! My apologies for not including what you need.

> 1) Always post the ACTUAL command line used (or log
> file line two) so we know what the site is, what ALL
> your settings are, etc.

I'm not sure what the "command line" means in this context, but I believe the
line in the log file you're asking for is one of these:

HTTrack3.44-1+htsswf+htsjava launched on Wed, 09 Jan 2013 19:04:07 at
<http://www.the-end.com/> <http://www.ronaldweinland.com/>
<http://www.biblical-truth.com/> <http://www.cog-pkg.org/> +*.png +*.gif +*.jpg
+*.pdf +*.mobi +*.epub +*.mp3 -*hi.mp3 -*hi-in.mp3 -*hi-ed.mp3 +*.css +*.php
+*.asp +*.aspx +*.js -ad.doubleclick.net/* -mime:application/foobar
+*?page_id=* +*?p=*

(winhttrack -qiC2t%Px%xs2u1%s%uN0%I0p7DaK0H0%kf2A50000%f#f -F "Mozilla/4.0
(compatible; MSIE 6.0; Windows NT 5.0)" -%F "<!-- Mirrored from %s%s by
HTTrack Website Copier/3.x [XR&CO'2010], %s -->" -%l "en, en, *"
<http://www.the-end.com/> <http://www.ronaldweinland.com/>
<http://www.biblical-truth.com/> <http://www.cog-pkg.org/> -O1 "D:\My Old
Documents\PKG\Publications\Websites\God's Church\PKG" +*.png +*.gif +*.jpg
+*.pdf +*.mobi +*.epub +*.mp3 -*hi.mp3 -*hi-in.mp3 -*hi-ed.mp3 +*.css +*.php
+*.asp +*.aspx +*.js -ad.doubleclick.net/* -mime:application/foobar
+*?page_id=* +*?p=* )


> 2) Always post the URLs you're not getting and from
> what URL.

Core website is www.cog-pkg.org, and the URLs that are not working are
../publications/, ../audio/, ../faq/, ../holydays/, and ../contact/.


> 3) Always post anything USEFUL from the log file.

I don't really see anything in the log file the resembles the issue in any
way. It's just a bunch of "link updated" and "link added", as you would
expect. I can obviously send the log file to someone if that's helpful.


> 4) If you want everything use the near flag (get
> non-html files related) not filters.

I don't actually want absolutely everything, and that's what my scan rules are
built for. But are you referring to the "Get non-HTML files related to a link"
setting?

> 5) I always run with No External Pages so I know
> where the mirror ends. I always run with browser
> ID=msie6 as some sites don't like a HTT one. I
> always run with Attempt to detect all links.

I also have both "No external pages" and "Attempt to detect all links"
checked. My "Browser Identity" is set to "Mozilla/4.0 (compatible; MSIE 6.0;
Windows NT 5.0)"; is that what you mean?