> I try to overcome the 9,999 link limit by placing
> "-#L1000000" in the additional options prompt. I am 
running
> the command line version in Linux.  It still panics at
> 9,999.

The -#L1000000 should do the trick, unless you have some 
shell expansion problem with # (?)
Try using "-#L1000000", but this shouldn't be necessary on 
Linux.