> If I search my web history it will reload the page
> but clicking on anything I get the same message.

Webhttrack spawns a web-server temporarily, which means you have to start
"WebHTTrack Website Copier" from the desktop, not from the browser.

> Anyway I am using the command line just fine.
> Although the download rate is constantly up and
> down, 8-26k/s(700MB in 8 hours).

The default rate is 25KB/s, but it can be changed
(--max-rate=100000)