> www.website.com/dir/dir/dir-001/
>             "          /dir-002/
>             "          /dir-003/
> My question is how do I set up the filters to only d/l 
> those 3 directories and all the directories and files 
> within them?
Set Options / Scan rules:

-*
+www.website.com/dir/dir/dir-001/*
+www.website.com/dir/dir/dir-002/*
+www.website.com/dir/dir/dir-003/*

(the leading -* is very important)