Hello, I have a similar problem. If I try to download
<http://www.pi.infn.it/~orso/didattica/fisica_e_elettronica/> the program save
only the home page, and not also other pages and files.

Tis is the command line: (winhttrack
-qwC2%Pns2u1%s%uN0%I0p3DaK0H0%kf2A25000%f#f -F "Mozilla/4.5 (compatible;
HTTrack 3.0x; Windows 98)" -%F "<!-- Mirrored from %s%s by HTTrack Website
Copier/3.x [XR&CO'2010], %s -->" -%l "it, en, *"
<http://www.pi.infn.it/~orso/didattica/fisica_e_elettronica/> -O1 "C:\Mie pagine
Web\Fisica II" +*.png +*.gif +*.jpg +*.css +*.js -ad.doubleclick.net/*
-mime:application/foobar )